The integration of multi-omics data presents a major challenge in precision medicine, requiring advanced computational methods for accurate disease classification and biological interpretation. This study introduces the Multi-Omics Graph Kolmogorov-Arnold Network (MOGKAN), a deep learning model that integrates messenger RNA, micro RNA sequences, and DNA methylation data with Protein-Protein Interaction (PPI) networks for accurate and interpretable cancer classification across 31 cancer types. MOGKAN employs a hybrid approach combining differential expression with DESeq2, Linear Models for Microarray (LIMMA), and Least Absolute Shrinkage and Selection Operator (LASSO) regression to reduce multi-omics data dimensionality while preserving relevant biological features. The model architecture is based on the Kolmogorov-Arnold theorem principle, using trainable univariate functions to enhance interpretability and feature analysis. MOGKAN achieves classification accuracy of 96.28 percent and demonstrates low experimental variability with a standard deviation that is reduced by 1.58 to 7.30 percents compared to Convolutional Neural Networks (CNNs) and Graph Neural Networks (GNNs). The biomarkers identified by MOGKAN have been validated as cancer-related markers through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. The proposed model presents an ability to uncover molecular oncogenesis mechanisms by detecting phosphoinositide-binding substances and regulating sphingolipid cellular processes. By integrating multi-omics data with graph-based deep learning, our proposed approach demonstrates superior predictive performance and interpretability that has the potential to enhance the translation of complex multi-omics data into clinically actionable cancer diagnostics.

This study investigates rare event detection on tabular data within binary classification. Standard techniques to handle class imbalance include SMOTE, which generates synthetic samples from the minority class. However, SMOTE is intrinsically designed for continuous input variables. In fact, despite SMOTE-NC-its default extension to handle mixed features (continuous and categorical variables)-very few works propose procedures to synthesize mixed features. On the other hand, many real-world classification tasks, such as in banking sector, deal with mixed features, which have a significant impact on predictive performances. To this purpose, we introduce MGS-GRF, an oversampling strategy designed for mixed features. This method uses a kernel density estimator with locally estimated full-rank covariances to generate continuous features, while categorical ones are drawn from the original samples through a generalized random forest. Empirically, contrary to SMOTE-NC, we show that MGS-GRF exhibits two important properties: (i) the coherence i.e. the ability to only generate combinations of categorical features that are already present in the original dataset and (ii) association, i.e. the ability to preserve the dependence between continuous and categorical features. We also evaluate the predictive performances of LightGBM classifiers trained on data sets, augmented with synthetic samples from various strategies. Our comparison is performed on simulated and public real-world data sets, as well as on a private data set from a leading financial institution. We observe that synthetic procedures that have the properties of coherence and association display better predictive performances in terms of various predictive metrics (PR and ROC AUC...), with MGS-GRF being the best one. Furthermore, our method exhibits promising results for the private banking application, with development pipeline being compliant with regulatory constraints.

Multi-omics data is increasingly being utilized to advance computational methods for cancer classification. However, multi-omics data integration poses significant challenges due to the high dimensionality, data complexity, and distinct characteristics of various omics types. This study addresses these challenges and evaluates three graph neural network architectures for multi-omics (MO) integration based on graph-convolutional networks (GCN), graph-attention networks (GAT), and graph-transformer networks (GTN) for classifying 31 cancer types and normal tissues. To address the high-dimensionality of multi-omics data, we employed LASSO (Least Absolute Shrinkage and Selection Operator) regression for feature selection, leading to the creation of LASSO-MOGCN, LASSO-MOGAT, and LASSO-MOTGN models. Graph structures for the networks were constructed using gene correlation matrices and protein-protein interaction networks for multi-omics integration of messenger-RNA, micro-RNA, and DNA methylation data. Such data integration enables the networks to dynamically focus on important relationships between biological entities, improving both model performance and interpretability. Among the models, LASSO-MOGAT with a correlation-based graph structure achieved state-of-the-art accuracy (95.9%) and outperformed the LASSO-MOGCN and LASSO-MOTGN models in terms of precision, recall, and F1-score. Our findings demonstrate that integrating multi-omics data in graph-based architectures enhances cancer classification performance by uncovering distinct molecular patterns that contribute to a better understanding of cancer biology and potential biomarkers for disease progression.

Despite being an integral tool for finding health-related information online, YouTube has faced criticism for disseminating COVID-19 misinformation globally to its users. Yet, prior audit studies have predominantly investigated YouTube within the Global North contexts, often overlooking the Global South. To address this gap, we conducted a comprehensive 10-day geolocation-based audit on YouTube to compare the prevalence of COVID-19 misinformation in search results between the United States (US) and South Africa (SA), the countries heavily affected by the pandemic in the Global North and the Global South, respectively. For each country, we selected 3 geolocations and placed sock-puppets, or bots emulating "real" users, that collected search results for 48 search queries sorted by 4 search filters for 10 days, yielding a dataset of 915K results. We found that 31.55% of the top-10 search results contained COVID-19 misinformation. Among the top-10 search results, bots in SA faced significantly more misinformative search results than their US counterparts. Overall, our study highlights the contrasting algorithmic behaviors of YouTube search between two countries, underscoring the need for the platform to regulate algorithmic behavior consistently across different regions of the Globe.

The application of machine learning methods to analyze changes in gene expression patterns has recently emerged as a powerful approach in cancer research, enhancing our understanding of the molecular mechanisms underpinning cancer development and progression. Combining gene expression data with other types of omics data has been reported by numerous works to improve cancer classification outcomes. Despite these advances, effectively integrating high-dimensional multi-omics data and capturing the complex relationships across different biological layers remains challenging. This paper introduces LASSO-MOGAT (LASSO-Multi-Omics Gated ATtention), a novel graph-based deep learning framework that integrates messenger RNA, microRNA, and DNA methylation data to classify 31 cancer types. Utilizing differential expression analysis with LIMMA and LASSO regression for feature selection, and leveraging Graph Attention Networks (GATs) to incorporate protein-protein interaction (PPI) networks, LASSO-MOGAT effectively captures intricate relationships within multi-omics data. Experimental validation using five-fold cross-validation demonstrates the method's precision, reliability, and capacity for providing comprehensive insights into cancer molecular mechanisms. The computation of attention coefficients for the edges in the graph by the proposed graph-attention architecture based on protein-protein interactions proved beneficial for identifying synergies in multi-omics data for cancer classification.

Industrial operations have grown exponentially over the last century, driving advancements in energy utilization through vehicles and machinery.This growth has significant environmental implications, necessitating the use of sophisticated technology to monitor and analyze climate data.The surge in industrial activities presents a complex challenge in forecasting its diverse environmental impacts, which vary greatly across different regions.Aim to understand these dynamics more deeply to predict and mitigate the environmental impacts of industrial activities.

Data generated by edge devices has the potential to train intelligent autonomous systems across various domains. Despite the emergence of diverse machine learning approaches addressing privacy concerns and utilizing distributed data, security issues persist due to the sensitive storage of data shards in disparate locations. This paper introduces a potentially groundbreaking paradigm for machine learning model training, specifically designed for scenarios with only a single magnetic image and its corresponding label image available. We harness the capabilities of Deep Learning to generate concise yet informative samples, aiming to overcome data scarcity. Through the utilization of deep learning's internal representations, our objective is to efficiently address data scarcity issues and produce meaningful results. This methodology presents a promising avenue for training machine learning models with minimal data.

Imbalanced data sets are a typical problem encountered practically in several applications (He and Garcia, 2009), such as fraud detection (Hassan and Abraham, 2016), medical diagnosis (Khalilia et al., 2011) and even churn detection (Nguyen and Duong, 2021). In presence of imbalanced data sets, most machine learning algorithms have a tendency to predict the majority class, therefore leading to biased predictions. Several strategies have been developed in order to handle this issue, as explained by Krawczyk (2016) and Ramyachitra and Manikandan (2014). All of these strategies can be split into two categories: the model-level approaches and the data-level approaches. Model-level approaches deal with this problem by acting directly on machine learning algorithms.

In this paper, we study the following problem. Consider a setting where a proposal is offered to the vertices of a given network $G$, and the vertices must conduct a vote and decide whether to accept the proposal or reject it. Each vertex $v$ has its own valuation of the proposal; we say that $v$ is ``happy'' if its valuation is positive (i.e., it expects to gain from adopting the proposal) and ``sad'' if its valuation is negative. However, vertices do not base their vote merely on their own valuation. Rather, a vertex $v$ is a \emph{proponent} of the proposal if the majority of its neighbors are happy with it and an \emph{opponent} in the opposite case. At the end of the vote, the network collectively accepts the proposal whenever the majority of its vertices are proponents. We study this problem for regular graphs with loops. Specifically, we consider the class $\mathcal{G}_{n|d|h}$ of $d$-regular graphs of odd order $n$ with all $n$ loops and $h$ happy vertices. We are interested in establishing necessary and sufficient conditions for the class $\mathcal{G}_{n|d|h}$ to contain a labeled graph accepting the proposal, as well as conditions to contain a graph rejecting the proposal. We also discuss connections to the existing literature, including that on majority domination, and investigate the properties of the obtained conditions.

Breast cancer is a prevalent form of cancer among women, with over 1.5 million women being diagnosed each year. Unfortunately, the survival rates for breast cancer patients in certain third-world countries, like South Africa, are alarmingly low, with only 40% of diagnosed patients surviving beyond five years. The inadequate availability of resources, including qualified pathologists, delayed diagnoses, and ineffective therapy planning, contribute to this low survival rate. To address this pressing issue, medical specialists and researchers have turned to domain-specific AI approaches, specifically deep learning models, to develop end-to-end solutions that can be integrated into computer-aided diagnosis (CAD) systems. By improving the workflow of pathologists, these AI models have the potential to enhance the detection and diagnosis of breast cancer. This research focuses on evaluating the performance of various cutting-edge convolutional neural network (CNN) architectures in comparison to a relatively new model called the Vision Trans-former (ViT). The objective is to determine the superiority of these models in terms of their accuracy and effectiveness. The experimental results reveal that the ViT models outperform the other selected state-of-the-art CNN architectures, achieving an impressive accuracy rate of 95.15%. This study signifies a significant advancement in the field, as it explores the utilization of data augmentation and other relevant preprocessing techniques in conjunction with deep learning models for the detection and diagnosis of breast cancer using datasets of Breast Cancer Histopathological Image Classification.